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  • Description
    AutoAssign is a constraint-based expert system for automating the analysis of backbone resonance assignments using triple resonance NMR spectra of small proteins.

    The AutoAssgin web interface can submit jobs to the AutoAssign server. It can also submit jobs to PINE (PLoS Comput Biol. 2009 Mar;5(3):e1000307), another automated resonance assignment web server. The AutoAssign interface will immediately show the results from the AutoAssign server. Once the PINE results are available by e-mail, the user can also upload them into the AutoAssign web interface. The AutoAssign web interface will then show an interactive comparison chart where the user can easily find different resonance assignments between the two programs. This comparison chart can generally guide the user for further investigation of resonances assigned differently by the AutoAssign and PINE web servers. The resonances assigned by both programs generally have higher accuracy confidences.

  • Wiki
    AutoAssign WebServer at the NESG Wiki

  • Reference
    Automated Analysis of Protein NMR Assignments Using Methods from Artificial Intelligence. J. Mol. Biol. (1997) 269, 592-610

  • Demo
    Click here to download an example data set in Sparky format.
    • AutoAssign Calculations
    Input Files and Parameters
    Name Required!
    Email Required!
    Protein Name Required!
    Sequence Parameters
    Sequence Required!
    Required! (default is 1)
    Peak lists
    Root Peaklist Required!
    Root Peaklist Required!
    Root Peaklist Required!